Smile! Protein and peptide sample preparation automated

Application for high throughput proteomic sample preparation for LC-MS analyses using iST, ENRICH and SP3® technology

The challenge:

Manually preparing samples for LC-MS analysis can be challenging due to the intensive hands-on time required and the lack of reproducibility. Achieving a robust, reliable, and reproducible workflow while starting from a wide range of biologically complex sample matrices is essential to unlocking the full potential of proteomics analysis.

The solution:

Harness iST technology with trusted Tecan automation. PreOmics® and Tecan® offer fully automated workflows for iST, ENRICH-iST, ENRICHplus, and SP3®-iST kits on the Fluent® system with A200 and i300 positive pressure modules. Achieve efficient, robust sample prep, including plasma, while minimizing hands-on time for high-quality LC-MS analysis.

*Tecan is a registered Trademark of a third party

Apply! Simple, streamlined workflows

1. Adding samples
Samples should be biofluids, homogenates or a soft pellet.
2. Kit setup
Prepare DIGEST (and EN or SP3® beads for ENRICH or SP3® kits) and add all reagents to the Tecan® instrument.
3. Sample preparation
Wash, lyse and digest samples (for SP3® or ENRICH directly on beads) on the Tecan® instrument.
4. Sample cleanup
Samples are automatically transferred to the clean-up plate and processed on the Tecan® Resolvex® A200 or i300.
5. MS and data analysis
Measure samples by LC-MS and analyse data.

Results


Figure 1:
Results of the ENRICH-iST automated protocol with Resolvex® i300 on Fluent®, including technical variation against manual protocol.
Approximately 1,150 proteins were identified in all samples, in agreement with the expected performance of the manually processed ENRICH-iST. The numbers of protein IDs were consistent for all samples, with a technical variation around 15%. This demonstrates the high efficiency, quality and robustness of the automated ENRICH-iST workflow.

A) Mean and standard deviation of identified protein groups. Pooled sample (blue) is a pool of plasma samples from multiple experimental days, injected five consecutive times.

B) Coefficient of variation (%CV) of protein abundance. Blue: Pooled sample. Green: Intra-day variance. Orange: inter-day across all three days.


Figure 1:
Results of the ENRICH-iST automated protocol with Resolvex® i300 on Fluent®, including technical variation against manual protocol.
Approximately 1,150 proteins were identified in all samples, in agreement with the expected performance of the manually processed ENRICH-iST. The numbers of protein IDs were consistent for all samples, with a technical variation around 15%. This demonstrates the high efficiency, quality and robustness of the automated ENRICH-iST workflow.

A) Mean and standard deviation of identified protein groups. Pooled sample (blue) is a pool of plasma samples from multiple experimental days, injected five consecutive times.

B) Coefficient of variation (%CV) of protein abundance. Blue: Pooled sample. Green: Intra-day variance. Orange: inter-day across all three days.

PreOmics®'

Tecan

values

Smile

Improved sample quality
  • Working range: 1-100 µg
  • Parity between manual and automated results
  • Excellent missed cleavage rate

Relax

Automated sample prep
  • Hands-free iST, ENRICH, and SP3® LC-MS prep
  • Process biofluids, homogenates, or soft pellets
  • Flexibly handle 1 to 96 samples

Realize

Cleaner peptides
  • Standardized workflow with high reproducibility
  • Dual clean up step removes hydrophilic and hydrophobic contaminants
  • Achieve ready-to-measure peptides

Tecan

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Application for high throughput proteomic sample preparation for LC-MS analyses using iST, ENRICH and SP3® technology
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Application for high throughput proteomic sample preparation for LC-MS analyses using iST, ENRICH and SP3® technology
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Application for high throughput proteomic sample preparation for LC-MS analyses using iST, ENRICH and SP3® technology
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